Selected Publications

2007

• Zhou X., Zhang X., Hu X., Semantic Smoothing of Document Models for Agglomerative Clustering, accepted in the Twentieth International Joint Conference on Artificial Intelligence(IJCAI 07), Hyderabad, India, Jan 6-12, 2007 (15.7%, 212/1353) [pdf]

2006

• Hu X., Wu D., Data Mining and Predictive Modeling of Biomolecular Network from Biomedical Literature Databases, to appear in IEEE/ACM Transactions on Computational Biology and Bioinformatics, (Dec., 2006 or early 2007)
• Hu X., Sokhansanj B, Wu D., Tang Y., A Novel Approach for Mining and Dynamic Fuzzy Simulation of Biomolecular Network, accepted to be published in IEEE Transactions on Fuzzy Systems.
• Hu X., Zhang X., Yoo Y, Zhou X., Mining Hidden Connections among Biomedical Concepts from Disjoint Biomedical Literature Sets through Semantic-based Association Rule,expected to be published in the Journal of Information Systems
• Zhou X., Hu X., Lin X., Zhang X., Relation-based Document Retrieval for Biomedical IR, LNCS Computational Systems Biology. Vol. 4. pp. 112 ¨C 128
• Huang Z., Li Y., Hu X., Anti-parallel Coiled Coils Structure Prediction by Support Vector Machine Classification, LNCS Transactions on Systems Biology, Vol. 4. pp. 1 - 8
• Hu X., Yoo I., Zhang X., Nanavati P., Das D., Wavelet Transformation and Cluster Ensemble for Gene Expression Analysis, International Journal of Bioinformatics Research and Application, Vol. 1, No. 4, 2006, pp 447-460
• Song M., Song I-Y, Hu X., Allen B., Integration of Association Rules and Ontology for Semantic-based Query Expansion, accepted in Data & Knowledge Engineering [pdf]
• Zhou X., Hu X., Zhang X., Lin X., Song I-Y, Context-Sensitive Semantic Smoothing for the Language Modeling Approach to Genomic IR, In the 29th Annual International ACM SIGIR Conference (SIGIR 2006), Aug 6-11, 2006, Seattle, WA, USA, pp. 170-177 (18.5%, 74/399) [pdf]
• Yoo I., Hu X., Song I-Y, Integration of Semantic-based Bipartite Graph Representation and Mutual Refinement Strategy for Biomedical Literature Clustering, In the 12th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD 2006), August 20 - 23, 2006, Philadelphia, PA, USA, short paper, pp. 791-796
• Yoo I., Hu X., A Comprehensive Comparison Study of Document Clustering for A Biomedical Digital Library MDELINE, in the 2006 ACM/IEEE Joint Conference on Digital Library (JCDL 2006), June 11-15, 2006, Chapel Hill, NC, USA, pp 220-229 (15%, 28/188) [pdf]
• Hu X., Zhang X., Yoo I, Zhang Y-Q, A Semantic Approach for Mining Hidden Links from Complementary and Non-Interactive Biomedical Literature, in the 2006 SIAM Conference on Data Mining (SIAM DM 2006), pp. 200-209, (16%, 40/244) [pdf]
• Yoo I., Hu X., Clustering Large Collection of Biomedical Literature based on Ontology-enriched Bipartite Graph Representation and Mutual Refinement Strategy, PAKDD 2006, April 9-12, 2006, Singapore, pp 303-312, (20%, 100/500) [pdf]
• Zhou X., Zhang X., Hu X., Using Concept-based Indexing to Improve Language Modeling Approach to Genomic, in the 28th European Conference on Information Retrieval (ECIR 2006), April 10-12, 2006, London, UK, Page 444-455 (21%, 37/178) [pdf]